Documents

Release Notes- Details of the database releases and ontology files
Annotation data files- All files must be provided in the standardized GAF 2.0 format.
- Download annotation files from the Planteome SVN repository
- Data Association file format 2.0 (Source: Gene Ontology Project)
- Evidence codes for use in annotation data files
Ontology Development on Planteome GitHub Repository:
- Plant Ontology
- Trait Ontology
- Plant Experimental Conditions Ontology
- Plant Stress Ontology
- Gene Ontology
- Phenotype and Trait Ontology (PATO)
- Link to OBO Foundry for more ontologies
API documentation
- Github page
Custom References for ontology definitons
- Plant Ontology references
Ontology relationship types
- OBO Relations Ontology
- Relations used in the Planteome Ontologies
Promotional information
- Planteome brochure

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