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Release Notes
- Details of the database releases and ontology files
Version 1.0 September 2016
Version 2.0 February 2017
Version 3.0 September 2018
Version 4.0 October 2020
Version 5.0 July 2023
Annotation data files
- All files must be provided in the standardized GAF 2.1 format.
Download annotation files from the
Planteome SVN repository
Data Association file format 2.1
(Source: Gene Ontology Project)
Evidence codes for use in annotation data files
Preparing annotation data files
Ontology Development on Planteome GitHub Repository
Plant Ontology
Trait Ontology
Plant Experimental Conditions Ontology
Plant Stress Ontology
Gene Ontology
Phenotype and Trait Ontology (PATO)
Link to
OBO Foundry
for more ontologies
API documentation
Github page
Custom References for ontology definitons
Plant Ontology references
Ontology relationship types
OBO Relations Ontology
Relations used in the Planteome Ontologies
Promotional information
Planteome brochure