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Found 78 results
2012
R. L. Walls, Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., Mungall, C. J., Preece, J., Rensing, S., Smith, B., and Stevenson, D. W., “Ontologies as Integrative Tools for Plant Science”, American Journal of Botany, vol. 99, no. 8, pp. 1263-75, 2012.
R. Walls, Smith, B., Elser, J., and Goldfain, A., “A plant disease extension of the Infectious Disease Ontology”, in International Conference on Biomedical Ontology (ICBO-2012), Graz, Austria, 2012, vol. 897.
J. Preece, “The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. Robinson College, Cambridge, UK, 2012.
L. Cooper, “The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa”, Plant Biology 2012. Austin, Tx, 2012.
L. D. Cooper, “The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa”, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
L. D. Cooper, “The Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa”, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
K. Van Auken, Fey, P., Berardini, T. Z., Dodson, R., Cooper, L., Li, D., Chan, J., Li, Y., Basu, S., Muller, H. - M., Chisholm, R., Huala, E., and Sternberg, P. W., “Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR”, Database, vol. 2012, 2012.
E. Arnaud, Cooper, L., Shrestha, R., Menda, N., Nelson, R. T., Matteis, L., Skofic, M., Bastow, R., Jaiswal, P., Mueller, L., and McLaren, G., “Towards a Reference Plant Trait Ontology for Modeling Knowledge of Plant Traits and Phenotype”, in International Conference on Knowledge Discovery and Information Retrieval (IC3K2012), Barcelona, Spain, 2012.
2011
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. C., Celton, J. - M., Rees, J. D. G., Williams, K. P., Holt, S. H., Rojas, J. J. R., Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. L., Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry (Fragaria vesca)”, Nat Genet, vol. 43, pp. 109 - 116, 2011.
R. L. Walls, “The Plant Ontology: an updated tool for all plant biologists”, International Botanical Congress (IBC2011). Melbourne, Australia, 2011.
J. Preece, “Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes”, in 4th International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2011), London, UK, 2011, pp. 96-97.
R. L. Walls, “Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets”. Cold Spring Harbor Laboratory, New York, 2011.
R. L. Walls, “Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in Physcomitrella patens”. Black Forest, Germany, 2011.
2010
J. L. Elser, “Computer Demonstration: Plant Ontology: Databases and Applications”. San Diego, CA, 2010.
R. L. Walls, “The Plant Ontology: A Common Reference Ontology for Plants”. Boston, MA, 2010.
L. Cooper, “The Plant Ontology: A Database for Plant Genomics”, Plant Biology 2010. Quebec, Montreal, Canada, 2010.
R. L. Walls, “The Plant Ontology: a tool for structural, developmental, and molecular plant biologists”, Botany 2010. Providence, RI, 2010.
J. L. Elser, “Plant Ontology: Databases And Applications”. 2010.
J. Preece, Elser, J., and Jaiswal, P., “A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species”, in NETTAB 2010 conference on Biological Wikis, Naples, Italy, 2010, pp. 109-112.
2009
C. - W. Tung, “Plant and Trait Ontology”. Rome, Italy, 2009.
C. - W. Tung, “POC poster presentation”, Plant & Animal Genome Conference XVII. San Diego, CA, 2009.
C. - W. Tung, “POC poster presentation”. Berlin, Germany, 2009.
2008
S. Avraham, Tung, C. - W., Ilic, K., Jaiswal, P., Kellogg, E. A., McCouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F., and Ware, D., “The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations”, Nucleic Acids Research, vol. 36, pp. D449-54, 2008.
K. Ilic, Rhee, S. Y., Kellogg, E. A., and Stevens, P. F., “Plant Structure Ontology (PSO) - A Morphological and Anatomical Ontology of Flowering Plants”, in Anatomy Ontologies for Bioinformatics, vol. 6, A. Burger, Davidson, D., and Baldock, R., Eds. London: Springer, 2008, pp. 27-42.
2007
K. Ilic, Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D., and Rhee, S. Y., “The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant”, Plant Physiology, vol. 143, pp. 587-99, 2007.

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Based on a work at planteome.org.

Planteome is an international collaborative effort and is supported by primary funding (IOS:1340112 award) from the National Science Foundation of USA.