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2018
I. Braun, Balhoff, J., Berardini, T. Z., Cooper, L. D., Gkoutos, G., Harper, L., Huala, E., Jaiswal, P., Kazic, T., Lapp, H., Macklin, J. A., Specht, C. D., Vision, T. J., Walls, R. L., and Lawerence-Dill, C. J., “'Computable' phenotypes enable comparative and predictive phenomics among plant species across domains of life”, in Application of Semantic Technologies in Biodiversity Science, vol. 33, A. E. Thessen, Ed. Berlin: OS Press/AKA Verlag, 2018, pp. 187-205.
2015
A. E. Thessen, Bunker, D. E., Buttigieg, P. L., Cooper, L. D., Dahdul, W. M., Domisch, S., Franz, N. M., Jaiswal, P., Lawrence-Dill, C. J., Midford, P. E., Mungall, C. J., Ramírez, M. J., Specht, C. D., Vogt, L., Vos, R. A., Walls, R. L., White, J. W., Zhang, G., Deans, A. R., Huala, E., Lewis, S. E., and Mabee, P. M., “Emerging semantics to link phenotype and environment”, PeerJ, vol. 3, no. e1470, 2015.
A. R. Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., “Finding Our Way through Phenotypes”, PLoS Biol, vol. 13, p. e1002033, 2015.
A. Oellrich, Walls, R. L., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G. V., Harper, L., He, M., Hoehndorf, R., Jaiswal, P., Kalberer, S. R., Lloyd, J. P., Meinke, D., Menda, N., Moore, L., Nelson, R. T., Pujar, A., Lawrence, C. J., and Huala, E., “An ontology approach to comparative phenomics in plants.”, Plant methods, vol. 11, p. 10, 2015.
2013
E. Huala, “Development of a Unified Phenotype Dataset for Plants”. San Diego, CA, 2013.
B. Atkinson, “Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines”, Botany 2013. New Orleans, LA, 2013.
L. Cooper and Walls, R. L., “The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses”, Plant & Cell Physiology, vol. 54, pp. 1-23, 2013.
2012
L. D. Cooper, “Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons”. San Diego, CA, 2012.
L. D. Cooper, “Annotating the Maize B73 Gene Expression Atlas – A Plant Ontology Use Case for Genomics Data Curation”. Washington DC, USA, 2012.
P. Jaiswal, “Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.”. Portland, OR, 2012.
L. D. Cooper, “Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. San Diego, CA, 2012.
F. Lens, Cooper, L., Gandolfo, M. A., Groover, P., Jaiswal, P., Lachenbruch, R., Spicer, R., Staton, D., Stevenson, D. W., Walls, R. L., and Wegrzyn, J., “An extension of the Plant Ontology project supporting wood anatomy and development research”, IAWA Journal, vol. 33, pp. 113-117, 2012.
R. L. Walls, “Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources”, in 3rd International Conference on Biomedical Ontology (ICBO 2012), Graz, Austria, 2012.
R. L. Walls, Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., Mungall, C. J., Preece, J., Rensing, S., Smith, B., and Stevenson, D. W., “Ontologies as Integrative Tools for Plant Science”, American Journal of Botany, vol. 99, no. 8, pp. 1263-75, 2012.
J. Preece, “The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. Robinson College, Cambridge, UK, 2012.
L. Cooper, “The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa”, Plant Biology 2012. Austin, Tx, 2012.
L. D. Cooper, “The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa”, Plant and Animal Genome XX Conference. San Diego, CA, 2012.
2011
R. L. Walls, “The Plant Ontology: an updated tool for all plant biologists”, International Botanical Congress (IBC2011). Melbourne, Australia, 2011.
R. L. Walls, “Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets”. Cold Spring Harbor Laboratory, New York, 2011.
R. L. Walls, “Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in Physcomitrella patens”. Black Forest, Germany, 2011.
2010
R. L. Walls, “The Plant Ontology: A Common Reference Ontology for Plants”. Boston, MA, 2010.
R. L. Walls, “The Plant Ontology: a tool for structural, developmental, and molecular plant biologists”, Botany 2010. Providence, RI, 2010.


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Based on a work at planteome.org.

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