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Found 81 results
2016
L. Cooper, Meier, A., Elser, J. L., Laporte, M. - A., Preece, J., Carbon, S., Xu, X., Kitchen, R. S., Qu, B., Zhang, E., Todorovic, S., Smith, B., Gkoutos, G., Doonan, J., Stevenson, D. W., Arnaud, E., Mungall, C., and Jaiswal, P., “The Planteome Project”, in ICBO-BioCreative 2016 Food, Nutrition, Health and Environment for the 9 Billion, Corvallis, OR, 2016.
2015
L. D. Cooper, “Curating Maize Diversity: Plant Trait Ontology Annotations for GWAS and QTL Data”. 2015.
A. E. Thessen, Bunker, D. E., Buttigieg, P. L., Cooper, L. D., Dahdul, W. M., Domisch, S., Franz, N. M., Jaiswal, P., Lawrence-Dill, C. J., Midford, P. E., Mungall, C. J., Ramírez, M. J., Specht, C. D., Vogt, L., Vos, R. A., Walls, R. L., White, J. W., Zhang, G., Deans, A. R., Huala, E., Lewis, S. E., and Mabee, P. M., “Emerging semantics to link phenotype and environment”, PeerJ, vol. 3, no. e1470, 2015.
A. R. Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., “Finding Our Way through Phenotypes”, PLoS Biol, vol. 13, p. e1002033, 2015.
S. Lennon, Cooper, L., Jaiswal, P., Ougham, H., and Stevenson, D. W., “New Phytologist and the Plant Ontology: Working Together to Enhance Journal Content”. 2015.
A. Oellrich, Walls, R. L., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G. V., Harper, L., He, M., Hoehndorf, R., Jaiswal, P., Kalberer, S. R., Lloyd, J. P., Meinke, D., Menda, N., Moore, L., Nelson, R. T., Pujar, A., Lawrence, C. J., and Huala, E., “An ontology approach to comparative phenomics in plants.”, Plant methods, vol. 11, p. 10, 2015.
L. Harper, Oellrich, A., Walls, R., Cannon, E., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G., He, M., Hoehndorf, R., and et al, “An Ontology Approach to Comparative Phenomics in Plants”. 2015.
L. Cooper, “Planteome Overview- DivSeek 2015”. 2015.
2014
N. Lingutla, Preece, J., Todorovic, S., Cooper, L., Moore, L., and Jaiswal, P., “AISO: Annotation of Image Segments with Ontologies”, Journal of Biomedical Semantics, vol. 5, p. 50, 2014.
L. Cooper, “Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics”. San Diego, CA, 2014.
P. Jaiswal, “Plant Environmental Condition Ontology (EO)”. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.
L. Cooper, “The Plant Ontology and the Trait Ontology: Resources for Plant Genomics”. Montpellier, France, 2014.
2013
J. Preece, “AISO: Annotation of Image Segments using Ontologies”. San Diego, CA, 2013.
N. T. V. Lingutla, “Annotation of image segments with ontologies (AISO)”, Oregon State University, Corvallis, 2013.
E. Huala, “Development of a Unified Phenotype Dataset for Plants”. San Diego, CA, 2013.
L. Cooper, “Development of the Reference Plant Trait Ontology: A Unified Resource for Plant Phenomics”. San Diego, CA, 2013.
C. N. Arighi, Carterette, B., Cohen, B. K., Krallinger, M., Wilbur, J. W., Fey, P., Dodson, R., Cooper, L., Van Slyke, C. E., Dahdul, W., Mabee, P., Li, D., Harris, B., Gillespie, M., Jimenez, S., Roberts, P., Matthews, L., Becker, K., Drabkin, H., Bello, S., Licata, L., Chatr-aryamontri, A., Schaeffer, M. L., Park, J., Haendel, M., Van Auken, K., Li, Y., Chan, J., Muller, H. - M., Cui, H., Balhoff, J. P., Chi-Yang Wu, J., Lu, Z., Wei, C. - H., Tudor, C. O., Raja, K., Subramani, S., Natarajan, J., Cejuela, J. M., Dubey, P., and Wu, C., “An overview of the BioCreative 2012 Workshop Track III: interactive text mining task”, Database, vol. 2013, 2013.
B. Atkinson, “Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines”, Botany 2013. New Orleans, LA, 2013.
L. Cooper and Walls, R. L., “The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses”, Plant & Cell Physiology, vol. 54, pp. 1-23, 2013.
P. Jaiswal, “A Resource for a Common Reference Ontology for Plants”, Plant and Animal Genome XXI Meeting. San Diego, CA, 2013.
E. Arnaud, “The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes”, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.
2012
L. D. Cooper, “Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons”. San Diego, CA, 2012.
L. D. Cooper, “Annotating the Maize B73 Gene Expression Atlas – A Plant Ontology Use Case for Genomics Data Curation”. Washington DC, USA, 2012.
P. Jaiswal, “Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.”. Portland, OR, 2012.
L. D. Cooper, “Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. San Diego, CA, 2012.

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Planteome by http://planteome.org is licensed under a Creative Commons Attribution 4.0 International License.
Based on a work at planteome.org.

Planteome is an international collaborative effort and is supported by primary funding (IOS:1340112 award) from the National Science Foundation of USA.