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Found 78 results
2015
A. R. Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., “Finding Our Way through Phenotypes”, PLoS Biol, vol. 13, p. e1002033, 2015.
S. Lennon, Cooper, L., Jaiswal, P., Ougham, H., and Stevenson, D. W., “New Phytologist and the Plant Ontology: Working Together to Enhance Journal Content”. 2015.
L. Harper, Oellrich, A., Walls, R., Cannon, E., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G., He, M., Hoehndorf, R., and et al, “An Ontology Approach to Comparative Phenomics in Plants”. 2015.
A. Oellrich, Walls, R. L., Cannon, E. K. S., Cannon, S. B., Cooper, L., Gardiner, J., Gkoutos, G. V., Harper, L., He, M., Hoehndorf, R., Jaiswal, P., Kalberer, S. R., Lloyd, J. P., Meinke, D., Menda, N., Moore, L., Nelson, R. T., Pujar, A., Lawrence, C. J., and Huala, E., “An ontology approach to comparative phenomics in plants.”, Plant methods, vol. 11, p. 10, 2015.
L. Cooper, “Planteome Overview- DivSeek 2015”. 2015.
2014
N. Lingutla, Preece, J., Todorovic, S., Cooper, L., Moore, L., and Jaiswal, P., “AISO: Annotation of Image Segments with Ontologies”, Journal of Biomedical Semantics, vol. 5, p. 50, 2014.
L. Cooper, “Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics”. San Diego, CA, 2014.
P. Jaiswal, “Plant Environmental Condition Ontology (EO)”. Phenotype Research Coordination Network, Biosphere2, Tucson, AZ, 2014.
L. Cooper, “The Plant Ontology and the Trait Ontology: Resources for Plant Genomics”. Montpellier, France, 2014.
2013
J. Preece, “AISO: Annotation of Image Segments using Ontologies”. San Diego, CA, 2013.
N. T. V. Lingutla, “Annotation of image segments with ontologies (AISO)”, Oregon State University, Corvallis, 2013.
E. Huala, “Development of a Unified Phenotype Dataset for Plants”. San Diego, CA, 2013.
L. Cooper, “Development of the Reference Plant Trait Ontology: A Unified Resource for Plant Phenomics”. San Diego, CA, 2013.
C. N. Arighi, Carterette, B., Cohen, B. K., Krallinger, M., Wilbur, J. W., Fey, P., Dodson, R., Cooper, L., Van Slyke, C. E., Dahdul, W., Mabee, P., Li, D., Harris, B., Gillespie, M., Jimenez, S., Roberts, P., Matthews, L., Becker, K., Drabkin, H., Bello, S., Licata, L., Chatr-aryamontri, A., Schaeffer, M. L., Park, J., Haendel, M., Van Auken, K., Li, Y., Chan, J., Muller, H. - M., Cui, H., Balhoff, J. P., Chi-Yang Wu, J., Lu, Z., Wei, C. - H., Tudor, C. O., Raja, K., Subramani, S., Natarajan, J., Cejuela, J. M., Dubey, P., and Wu, C., “An overview of the BioCreative 2012 Workshop Track III: interactive text mining task”, Database, vol. 2013, 2013.
B. Atkinson, “Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines”, Botany 2013. New Orleans, LA, 2013.
L. Cooper and Walls, R. L., “The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses”, Plant & Cell Physiology, vol. 54, pp. 1-23, 2013.
P. Jaiswal, “A Resource for a Common Reference Ontology for Plants”, Plant and Animal Genome XXI Meeting. San Diego, CA, 2013.
E. Arnaud, “The Species-Specific Crop Ontology (Generation Challenge Programme): Application and Integration into the Reference Plant Trait Ontology to Enable Data Mining on Phenotypes”, Plant and Animal Genome XXI Conference. San Diego, CA, 2013.
2012
L. D. Cooper, “Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons”. San Diego, CA, 2012.
L. D. Cooper, “Annotating the Maize B73 Gene Expression Atlas – A Plant Ontology Use Case for Genomics Data Curation”. Washington DC, USA, 2012.
P. Jaiswal, “Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.”. Portland, OR, 2012.
L. D. Cooper, “Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. San Diego, CA, 2012.
F. Lens, Cooper, L., Gandolfo, M. A., Groover, P., Jaiswal, P., Lachenbruch, R., Spicer, R., Staton, D., Stevenson, D. W., Walls, R. L., and Wegrzyn, J., “An extension of the Plant Ontology project supporting wood anatomy and development research”, IAWA Journal, vol. 33, pp. 113-117, 2012.
“The Gene Ontology: enhancements for 2011”, Nucleic acids research, vol. 40, no. Database issue, pp. D559-64, 2012.
R. L. Walls, “Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resources”, in 3rd International Conference on Biomedical Ontology (ICBO 2012), Graz, Austria, 2012.

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Based on a work at planteome.org.

Planteome is an international collaborative effort and is supported by primary funding (IOS:1340112 award) from the National Science Foundation of USA.