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Publications

Found 13 results

Filters: Author is Elser, Justin [Clear All Filters]

2018

A. Meier, Laporte, M. - A., Elser, J., Cooper, L., Preece, J., Jaiswal, P., and Poelen, J., “OOPS: The Ontology of Plant Stress, A semi-automated standardization methodology”, in ICBO 2018, Corvallis, OR, 2018.

D. Trigkakis, Preece, J., Meier, A., Elser, J., Kvilekval, K., Fedorov, D., Manjunath, B. S., Jaiswal, P., and Todorovic, S., “Planteome & BisQue: Automating Image Annotation with Ontologies using Deep-Learning Networks”, in 9th International Conference on Biological Ontology (ICBO 2018) , Corvallis, OR, 2018.

2017

B. Qu, Kumar, P., Zhang, E., Jaiswal, P., Cooper, L. D., Elser, J., and Zhang, Y., “Interactive design and visualization of N-ary relationships”, in SIGGRAPH Asia 2017 Symposium on Visualization, Bangkok, Thailand, 2017.

2016

A. Meier, Cooper, L., Laporte, M. A. -, Elser, J., and Jaiswal, P., “Annotating germplasm to Planteome reference ontologies”, in ICBO-BioCreative 2016 Food, Nutrition, Health and Environment for the 9 Billion, Corvallis, Oregon, USA, 2016.

P. Jaiswal, Cooper, L., Elser, J., Meier, A., and et al, “Planteome: A Resource for Common Reference Ontologies and Applications for Plant Biology”. 2016.

B. Qu, Diefenbaugh, J., Elser, J., Carbon, S., Mungall, C., Zhang, E., and Jaiswal, P., “Planteome Gene Annotation Enrichment Analysis”, in ICBO-BioCreative 2016 Food, Nutrition, Health and Environment for the 9 Billion, Corvallis, Oregon, USA, 2016.

2015

L. Cooper, “Planteome Overview- DivSeek 2015”. 2015.

2013

L. Cooper and Walls, R. L., “The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses”, Plant & Cell Physiology, vol. 54, pp. 1-23, 2013.

2012

R. L. Walls, Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., Mungall, C. J., Preece, J., Rensing, S., Smith, B., and Stevenson, D. W., “Ontologies as Integrative Tools for Plant Science”, American Journal of Botany, vol. 99, no. 8, pp. 1263-75, 2012.

R. Walls, Smith, B., Elser, J., and Goldfain, A., “A plant disease extension of the Infectious Disease Ontology”, in International Conference on Biomedical Ontology (ICBO-2012), Graz, Austria, 2012, vol. 897.

2011

V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. C., Celton, J. - M., Rees, J. D. G., Williams, K. P., Holt, S. H., Rojas, J. J. R., Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. L., Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., “The genome of woodland strawberry (Fragaria vesca)”, Nat Genet, vol. 43, pp. 109 - 116, 2011.

J. Preece, “Planteome Annotation Wiki: A Semantic Application for the Community Curation of Plant Genotypes and Phenotypes”, in 4th International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2011), London, UK, 2011, pp. 96-97.

2010

J. Preece, Elser, J., and Jaiswal, P., “A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species”, in NETTAB 2010 conference on Biological Wikis, Naples, Italy, 2010, pp. 109-112.