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Publications

Found 16 results
Filters: Author is Elser, Justin  [Clear All Filters]
2023
S. A. Aleksander, Balhoff, J., Carbon, S., J Cherry, M., Drabkin, H. J., Ebert, D., Feuermann, M., Gaudet, P., Harris, N. L., Hill, D. P., Lee, R., Mi, H., Moxon, S., Mungall, C. J., Muruganugan, A., Mushayahama, T., Sternberg, P. W., Thomas, P. D., Van Auken, K., Ramsey, J., Siegele, D. A., Chisholm, R. L., Fey, P., Aspromonte, M. Cristina, Nugnes, M. Victoria, Quaglia, F., Tosatto, S., Giglio, M., Nadendla, S., Antonazzo, G., Attrill, H., Santos, G. Dos, Marygold, S., Strelets, V., Tabone, C. J., Thurmond, J., Zhou, P., Ahmed, S. H., Asanitthong, P., Buitrago, D. Luna, Erdol, M. N., Gage, M. C., Kadhum, M. Ali, Li, K. Yan Chloe, Long, M., Michalak, A., Pesala, A., Pritazahra, A., Saverimuttu, S. C. C., Su, R., Thurlow, K. E., Lovering, R. C., Logie, C., Oliferenko, S., Blake, J., Christie, K., Corbani, L., Dolan, M. E., Drabkin, H. J., Hill, D. P., Ni, L., Sitnikov, D., Smith, C., Cuzick, A., Seager, J., Cooper, L., Elser, J., Jaiswal, P., Gupta, P., Jaiswal, P., Naithani, S., Lera-Ramirez, M., Rutherford, K., Wood, V., De Pons, J. L., Dwinell, M. R., G Hayman, T., Kaldunski, M. L., Kwitek, A. E., Laulederkind, S. J. F., Tutaj, M. A., Vedi, M., Wang, S. - J., D'Eustachio, P., Aimo, L., Axelsen, K., Bridge, A., Hyka-Nouspikel, N., Morgat, A., Aleksander, S. A., J Cherry, M., Engel, S. R., Karra, K., Miyasato, S. R., Nash, R. S., Skrzypek, M. S., Weng, S., Wong, E. D., Bakker, E., Berardini, T. Z., Reiser, L., Auchincloss, A., Axelsen, K., Argoud-Puy, G., Blatter, M. - C., Boutet, E., Breuza, L., Bridge, A., Casals-Casas, C., Coudert, E., Estreicher, A., Famiglietti, M. Livia, Feuermann, M., Gos, A., Gruaz-Gumowski, N., Hulo, C., Hyka-Nouspikel, N., Jungo, F., Le Mercier, P., Lieberherr, D., Masson, P., Morgat, A., Pedruzzi, I., Pourcel, L., Poux, S., Rivoire, C., Sundaram, S., Bateman, A., Bowler-Barnett, E., Bye-A-Jee, H., Denny, P., Ignatchenko, A., Ishtiaq, R., Lock, A., Lussi, Y., Magrane, M., Martin, M. J., Orchard, S., Raposo, P., Speretta, E., Tyagi, N., Warner, K., Zaru, R., Diehl, A. D., Lee, R., Chan, J., Diamantakis, S., Raciti, D., Zarowiecki, M., Fisher, M., James-Zorn, C., Ponferrada, V., Zorn, A., Ramachandran, S., Ruzicka, L., and Westerfield, M., The Gene Ontology knowledgebase in 2023., Genetics, vol. 224, no. 1, 2023.
L. Cooper, Elser, J., Laporte, M. - A., Arnaud, E., and Jaiswal, P., Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology, Nucleic Acids Research, 2023.
A. E. Thessen, Cooper, L., Swetnam, T. L., Hegde, H., Reese, J., Elser, J., and Jaiswal, P., Using knowledge graphs to infer gene expression in plants, Frontiers in Artificial Intelligence, vol. 6, p. 1201002, 2023.
2017
B. Qu, Kumar, P., Zhang, E., Jaiswal, P., Cooper, L. D., Elser, J., and Zhang, Y., Interactive design and visualization of N-ary relationships, in SIGGRAPH Asia 2017 Symposium on Visualization, Bangkok, Thailand, 2017.
2016
A. Meier, Cooper, L., Laporte, M. A. -, Elser, J., and Jaiswal, P., Annotating germplasm to Planteome reference ontologies, in ICBO-BioCreative 2016 Food, Nutrition, Health and Environment for the 9 Billion, Corvallis, Oregon, USA, 2016.
P. Jaiswal, Cooper, L., Elser, J., Meier, A., and et al, Planteome: A Resource for Common Reference Ontologies and Applications for Plant Biology. 2016.
B. Qu, Diefenbaugh, J., Elser, J., Carbon, S., Mungall, C., Zhang, E., and Jaiswal, P., Planteome Gene Annotation Enrichment Analysis, in ICBO-BioCreative 2016 Food, Nutrition, Health and Environment for the 9 Billion, Corvallis, Oregon, USA, 2016.
2012
R. L. Walls, Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., Mungall, C. J., Preece, J., Rensing, S., Smith, B., and Stevenson, D. W., Ontologies as Integrative Tools for Plant Science, American Journal of Botany, vol. 99, no. 8, pp. 1263-75, 2012.
R. Walls, Smith, B., Elser, J., and Goldfain, A., A plant disease extension of the Infectious Disease Ontology, in International Conference on Biomedical Ontology (ICBO-2012), Graz, Austria, 2012, vol. 897.
2010
J. Preece, Elser, J., and Jaiswal, P., A Semantic Wiki for Genotype/Phenotype Annotation in Plant Species, in NETTAB 2010 conference on Biological Wikis, Naples, Italy, 2010, pp. 109-112.