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Publications

Found 18 results

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2018

L. Cooper, Meier, A., Laporte, M. - A., Elser, J. L., Mungall, C., Sinn, B. T., Cavaliere, D., Dunn, N. A., Smith, B., Qu, B., Preece, J., Zhang, E., Todorovic, S., Gkoutos, G., Doonan, J., Stevenson, D. W., Arnaud, E., and Jaiswal, P., “The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics”, Nucleic Acids Research, 2018.

2016

L. Cooper, Meier, A., Elser, J. L., Laporte, M. - A., Preece, J., Carbon, S., Xu, X., Kitchen, R. S., Qu, B., Zhang, E., Todorovic, S., Smith, B., Gkoutos, G., Doonan, J., Stevenson, D. W., Arnaud, E., Mungall, C., and Jaiswal, P., “The Planteome Project”, in ICBO-BioCreative 2016 Food, Nutrition, Health and Environment for the 9 Billion, Corvallis, OR, 2016.

2015

A. R. Deans, Lewis, S. E., Huala, E., Anzaldo, S. S., Ashburner, M., Balhoff, J. P., Blackburn, D. C., Blake, J. A., Burleigh, G. J., Chanet, B., Cooper, L. D., Courtot, M., Csösz, S., Cui, H., Dahdul, W., Das, S., Dececchi, A. T., Dettai, A., Diogo, R., Druzinsky, R. E., Dumontier, M., Franz, N. M., Friedrich, F., Gkoutos, G. V., Haendel, M., Harmon, L. J., Hayamizu, T. F., He, Y., Hines, H. M., Ibrahim, N., Jackson, L. M., Jaiswal, P., James-Zorn, C., Köhler, S., Lecointre, G., Lapp, H., Lawrence, C. J., Le Novère, N., Lundberg, J. G., Macklin, J., Mast, A. R., Midford, P. E., Mikó, I., Mungall, C. J., Oellrich, A., Osumi-Sutherland, D., Parkinson, H., Ramírez, M. J., Richter, S., Robinson, P. N., Ruttenberg, A., Schulz, K. S., Segerdell, E., Seltmann, K. C., Sharkey, M. J., Smith, A. D., Smith, B., Specht, C. D., Squires, B. R., Thacker, R. W., Thessen, A., Fernandez-Triana, J., Vihinen, M., Vize, P. D., Vogt, L., Wall, C. E., Walls, R. L., Westerfeld, M., Wharton, R. A., Wirkner, C. S., Woolley, J. B., Yoder, M. J., Zorn, A. M., and Mabee, P., “Finding Our Way through Phenotypes”, PLoS Biol, vol. 13, p. e1002033, 2015.

2014

L. Cooper, “Common Reference Ontologies for Plant Biology (cROP): A Platform for Integrative Plant Genomics”. San Diego, CA, 2014.

2013

B. Atkinson, “Plant Ontology, a controlled and structured plant vocabulary for all botanical disciplines”, Botany 2013. New Orleans, LA, 2013.

L. Cooper and Walls, R. L., “The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses”, Plant & Cell Physiology, vol. 54, pp. 1-23, 2013.

P. Jaiswal, “A Resource for a Common Reference Ontology for Plants”, Plant and Animal Genome XXI Meeting. San Diego, CA, 2013.

2012

L. D. Cooper, “Annotating Gene Expression in Physcomitrella patens using the Plant Ontology: Facilitating Cross-Taxa Comparisons”. San Diego, CA, 2012.

L. D. Cooper, “Annotating the Maize B73 Gene Expression Atlas – A Plant Ontology Use Case for Genomics Data Curation”. Washington DC, USA, 2012.

P. Jaiswal, “Annotating the Maize B73 Gene Expression Atlas in the Plant Ontology- A Tool for Plant Genomics.”. Portland, OR, 2012.

L. D. Cooper, “Expanding the Plant Ontology: Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. San Diego, CA, 2012.

R. L. Walls, Athreya, B., Cooper, L., Elser, J., Gandolfo, M. A., Jaiswal, P., Mungall, C. J., Preece, J., Rensing, S., Smith, B., and Stevenson, D. W., “Ontologies as Integrative Tools for Plant Science”, American Journal of Botany, vol. 99, no. 8, pp. 1263-75, 2012.

R. Walls, Smith, B., Elser, J., and Goldfain, A., “A plant disease extension of the Infectious Disease Ontology”, in International Conference on Biomedical Ontology (ICBO-2012), Graz, Austria, 2012, vol. 897.

J. Preece, “The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa”. Robinson College, Cambridge, UK, 2012.

L. Cooper, “The Plant Ontology: A Tool for Linking Plant Anatomy and Development to Genomics Across Plant Taxa”, Plant Biology 2012. Austin, Tx, 2012.

L. D. Cooper, “The Plant Ontology: Linking Genomic and Phenomic Data Across Plant Taxa”, Plant and Animal Genome XX Conference. San Diego, CA, 2012.

2011

R. L. Walls, “Using the Plant Ontology to improve the interoperability of genomic and phenomic data sets”. Cold Spring Harbor Laboratory, New York, 2011.

R. L. Walls, “Using the Plant Ontology to Link Anatomical Structures to Gene Annotations in Physcomitrella patens”. Black Forest, Germany, 2011.